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clean.fasta.name()
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Clean the name of a fasta file |
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dat2fasta()
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Convert and Save sequence data frame to fasta file |
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dat2phylip()
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Conver the data frame to sequential PHYLIP format file |
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get.fasta.name()
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get the names of all the sequences of fasta file |
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get.phylip.name()
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get the names of sequences from a PHYLIP file |
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phylotools-package
|
Phylogenetic tools for building PHYLIP supermatrix and more |
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read.fasta()
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Read FASTA file |
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read.phylip()
|
read phylip file |
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rename.fasta()
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Rename the sequences for a fasta file |
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rm.sequence.fasta()
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Delete sequences from fasta file |
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split_dat()
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grouping the data frame containing sequences and names and generate fasta file |
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sub.taxa.label()
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Substitute the tip labels of a phylogenetic tree |
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supermat()
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Build PHYLIP supermatrix and RAxML partition file using aligned FASTA or PHYLIP files. |